國家高速網路與計算中心2010/07/19-20 Accelrys / Pipeline Pilot Part II教學研討會
課程名稱：Accelrys Pipeline Pilot對生命科學資訊的整合分析應用– II
上課時間：2010/7/19 (一) ~ 2010/7/20 (二) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Accelrys Pipeline Pilot is an advanced data and application integration platform for high-speed and high-throughput scientific computing. Through this course the participants will learn how to use Pipeline Pilot components to build customized workflows known as protocols to process and analyze diverse scientific data including biological sequences.
課程內容安排：
• Day 1 – Pipeline Pilot Basics
• Introduction and Overview of Pipeline Pilot
• Pipeline Pilot Components and Protocols
• Data Manipulation and Filtering in Pipeline Pilot
• Basics of PilotScript
• Merge and Join
• Subprotocols and WebPort
• Day 2 –
• 1. Reporting Collection
• Overview of PP Reporting
• Reporting Data Structure
• Basic Reporting Components
• Building Tables and Charts
• Building Report Layouts
2. R-Statistics Collection
• Basics of R
• R Plotting Components
• R Analysis Components
• Clustering and Learning
• R Customization
3. Introduction to Data Modeling Collection
4. Introduction to PP Application and Database Integration
報名網址：https://edu.nchc.org.tw/course/one_course_introduction.asp?lms_auto_course_id=1396&from_course_list_url=course_index
國家高速網路與計算中心2010/07/12-13 Accelrys / Pipeline Pilot Part I教學研討會
課程名稱：Accelrys Pipeline Pilot對生命科學資訊的整合分析應用– I
上課時間：2010/07/12 (一)~ 2010/7/13 (二) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Accelrys Pipeline Pilot is an advanced data and application integration platform for high-speed and high-throughput scientific computing. Through this course the participants will learn how to use Pipeline Pilot components to build customized workflows known as protocols to process and analyze diverse scientific data including biological sequences.
課程內容安排：
• Day 1 – Pipeline Pilot Basics
• Introduction and Overview of Pipeline Pilot
• Pipeline Pilot Components and Protocols
• Data Manipulation and Filtering in Pipeline Pilot
• Basics of PilotScript
• Merge and Join
• Subprotocols and WebPort
• Day 2 –
• 1. Sequence Analysis Collection
• Basics of Sequence Analysis
• Sequence Data Record and Structure
• SAC Components and Protocols
• Sequence Alignment and Database Searching
2. Text Analytics Collection
• Basics of Text Analytics
• Searching Database
• Annotation and Filtering
• Trends and Correlation
3. Introduction to Gene Expression Collection
4. Introduction to Imaging Collection
報名網址：https://edu.nchc.org.tw/course/one_course_introduction.asp?lms_auto_course_id=1395&from_course_list_url=homepage
國家高速網路與計算中心2010/07/07~08 Accelrys / Discovery Studio Part II教學研討會(已延期，新上課時間將另行通知)
課程名稱：Computational Chemistry and Biology Using Accelrys Discovery Studio-Part II
上課地點：財團法人國家實驗研究院國家高速網路與計算中心/竹科B教室
上課時間：2010/07/07 (三) ~2010/07/08 (四) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Discovery Studio® provides the most advanced software solutions for life science researchers available today. Through this course the participants will learn how to use DS protocol to select/screen, and analyze compounds or complex by structure-based and ligand (pharmacophore)-based design.
課程內容安排：
• Day 1-DS Visualizer Client and Structure-Based Design
• Introduction and Overview of Discovery Studio
• Docking and Scoring in DS
• Day 2-Structure-Based Design / Ligand-Based Design
• Introduction to Pharmacophores and Manual Pharmacophore Building
• Automatic Hypothesis Generation
課程附註：Only introduction to DS vusualizer, but not contain DS visualizer hands-on part.
國家高速網路與計算中心2010/07/05-06 Accelrys / Materials Studio Part II教學研討會
課程名稱：Material Modeling Using Accelrys Materials Studio – Part II
上課地點：財團法人國家實驗研究院國家高速網路與計算中心/竹科B教室
上課時間：2010/07/05(一)～2010/07/06 (二) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Materials Studio® is a software environment that brings the world's most advanced and validated materials simulation technology to desktop computing. Offering advanced visualization tools and access to the complete range of computational materials science methods, Through this course the participants will learn how to use MS from model building to advanced material simulation in atomistic level.
課程內容安排：進階課程
•Day 1- Advanced Ab-initio simulation
•Advanced calculation parameters
•An Overview of Applications in Ab-initio simulation
•Hands-On
•Day 2- QSAR, Reflex, Morphology
•A Statistical Method (QSAR)
•Crystallization Tools in MS
•Hands-On
國家高速網路與計算中心2010/06/30-07/01 Accelrys / Discovery Studio Part I 教學研討會(已延期，新上課時間將另行通知)
課程名稱：Computational Chemistry and Biology Using Accelrys Discovery Studio-Part I
上課地點：財團法人國家實驗研究院國家高速網路與計算中心/竹科B教室
上課時間：2010/06/30 (三) ~ 2010/07/01 (四) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Discovery Studio® provides the most advanced software solutions for life science researchers available today. Through this course the participants will learn how to use DS protocol to build homolog model, to predict protein-protein complex/interaction
課程內容安排：
• Day 1-DS Visualizer Client (Basic) and Protein Modeling (Homology Modeling)
• Introduction and Overview of Discovery Studio
• From Sequence to Protein Structure
• Day 2-Protein Modeling (Protein-Protein Docking, Knowledge-based solution)
• Predict Protein-Protein Interaction
• Eidogen- Target Informatics Platform
課程附註：This section will contain basic visualizer introduction and hands-on exercise.
報名網址：https://edu.nchc.org.tw/course/one_course_introduction.asp?lms_auto_course_id=1392&from_course_list_url=homepage
國家高速網路與計算中心2010/06/28-29 Accelrys / Materials Studio Part I 教學研討會
課程名稱：Material Modeling Using Accelrys Materials Studio–Part I
上課地點：財團法人國家實驗研究院國家高速網路與計算中心/竹科B教室
上課時間：2010/06/28 (一)～2010/06/29 (二) AM09:30~PM16:30
上課總天數：2 天，共計 12 個小時
課程介紹：Materials Studio® is a software environment that brings the world's most advanced and validated materials simulation technology to desktop computing. Offering advanced visualization tools and access to the complete range of computational materials science methods, Through this course the participants will learn how to use MS from model building to basic material simulation in atomistic level.
課程內容安排：基礎課程
• Day 1-Classical Molecular Dynamics in MS
• Introduction and Overview of Materials Studio
• Molecular Dynamics Simulation
• Classical MD and Monte Carlo method
• Hands-On
• Day 2-Ab-initio simulation and more
• Introduction to Ab-initio and Semi-empirical Method
• Hands-On
時 間：2010/06/02 (Wed) 14:00 - 16:00 PM
講 師：分子視算公司 洪國彥先生, IPA Certified Analyst
地 點：臺大醫院圖書室四樓簡報室
報名網址：http://ntuml.mc.ntu.edu.tw/action/index.htm
Agenda:
★ Getting Started
Searching
Introduction of Search tools
Hands-on Exercise I
★ Building Pathways
Introduction of building custom pathway
Hands-on Exercise II
★ Data Upload and Running an Analysis
Introduction of uploading data sets to IPA and running an analysis
Hands-on Exercise III
課程名稱：Ingenuity Pathways Analysis (IPA®):系統生物學在生醫研究上之最佳應用
時 間：2010/05/27 (Thu) 15:00-17:00 PM
講 師：分子視算公司 洪國彥先生, IPA Certified Analyst
地 點：中央研究院生醫所 N624
Agenda:
★ Getting Started
Searching
Introduction of Search tools
Hands-on Exercise I
★ Building Pathways
Introduction of building custom pathway
Hands-on Exercise II
★ Data Upload and Running an Analysis
Introduction of uploading data sets to IPA and running an analysis
Hands-on Exercise III
課程名稱：Ingenuity Pathways Analysis (IPA®):基礎教育訓練課程-系統生物學在生醫研究上之最佳應用
時 間：2010/05/26 (Wed) 14:30-17:00 PM
講 師：分子視算公司 洪國彥先生, IPA Certified Analyst
地 點：國立台灣大學校本部計算中心1樓 R110
報名網址：http://ntuml.mc.ntu.edu.tw/action/index.htm
Agenda:
★ Getting Started
Searching
Introduction of Search tools
Hands-on Exercise I
★ Building Pathways
Introduction of building custom pathway
Hands-on Exercise II
★ Data Upload and Running an Analysis
Introduction of uploading data sets to IPA and running an analysis
Hands-on Exercise III
